Scaffold Ga0049084_10128688

Overview

Basic Information

• Taxon OID: 3300005585
• Scaffold ID: Ga0049084_10128688
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 893
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F023347	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049084_101286881	F023347	N/A	INGLDIMHGELKNLMLIWEKELENAQAIEDESEEAMDSMERTRCEGFLDALTALYQLTYQLSFAIAEKEKRDEARG*
Ga0049084_101286883	F000441	AGGAGG	MKMSDIYINEQLSKAQALLWSGSLHEVDEAHNIISNLIQDRMGKAEGTNV*
Ga0049084_101286884	F001019	GAGG	MSDYVPSLEILEVNYSCSPGGIDMFEVYDKSDIPLDIPIYETQSLTEAVLFCYNLGKDFTVRTYAEWEERESLYAS