Scaffold Ga0049084_10067807

Overview

Basic Information

• Taxon OID: 3300005585
• Scaffold ID: Ga0049084_10067807
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017998	Metagenome	237	Y
F019478	Metagenome	229	Y
F038234	Metagenome	166	Y
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049084_100678072	F017998	N/A	MNLERLDLEKYEVLELERSNTIADPLYQQWMSELKVSSSYSDREGIIRANDLNNQYTYSVLGKNKSTKFSVSSILSVFK*
Ga0049084_100678073	F038234	N/A	MLTIQNIDSLKGTYVGHWKIHYVANLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGNRHYLPIESIGDRDVFIRFLIDELI*
Ga0049084_100678074	F084228	N/A	MLTIKNINKLVNRKLIGGWVIKDMNYIQKKYMFDIQCISPIGVCMDRCTISLNRIGELQRNMFKPDTTAYFFNYNGERTDVCVTKDWIKNPENFISQLKYIINEYHNKQ*
Ga0049084_100678075	F019478	AGG	MVLKIINVNKMVGTVYWNRRFKCLQVHETDTNYRFQFDDVQIPNKYVWVEVRKDGHYNQEHQVWEYRLNYMKCPGHVITAKWFEDYKN