Scaffold Ga0049082_10094872

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10094872
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100948722	F011646	GGTGG	MVVINVDMRWQVSNVVELRNGSLKRIIFYEVADQQNIAIWGGESALEALKWYRNSPNGSRIYVQEWLTDEEDAKQVSPQIEITPIVLSTIANCMDRWV*
Ga0049082_100948723	F011756	AGAAG	MAEPRYLEGDEYALNGGYEELVDCKECKKEFDQLEYRSDTCSECEDKQVKREKERV*
Ga0049082_100948725	F029021	N/A	EIARPDWYHRYNGKMICDNCVMDTMSEREKEKAND*