Scaffold Ga0049082_10059833

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10059833
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1337
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060658	Metagenome / Metatranscriptome	132	Y
F078232	Metagenome / Metatranscriptome	116	N
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100598331	F078232	AGGAGG	MPALTAQEIASLSGCFDCLSPGIKQTYIITLLQQIQVALLDAARTTGSAGGLLTVAATAAANPVRRRFVIQNQKAEILYVKFGTGCTTTDYHYVLLSAATVGTPGTSLTFEG
Ga0049082_100598332	F097235	AGGA	MYGQMMGKRKMDGMGRMGSEVETIEFTPPKELRLEGDSGTAMVDWRTTARGTIEIIGFDGITLGGSGQQDVEEVAGAEMEMDDMEEEA*
Ga0049082_100598333	F060658	N/A	RALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEILPTCEPDAEQYAAQNYSSVDPVCPSVIQFTAVIDDASPARYTIGANGILCDDNIVANAAGISVATVPDLIVALQNRWDTEFGVGSGTWSVVVVGGTLIQLSGSSCTNVTLEFAI*