Scaffold Ga0049082_10020141

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10020141
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2307
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y
F067657	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100201412	F034566	AGG	MRLKLKSIVWVQTFLIVILSTALLFLGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDDHLRTVDKANSVIDDIVNRYNTLVARYNKSTGGTNYDPLNTYSYRIRP*
Ga0049082_100201413	F054581	AGGA	MCPHCNAPLIPILYGYASPKYVDMHKEGLIFLVSTTYHTKHDPTSYCKRCNESFNIKLDYNL*
Ga0049082_100201416	F067657	N/A	NYGEQQFMTQSWFNINYTKKGKLDWHDHGGNGAPNFHGYYCVSAEPSTTHYKVFDKEIENINKNNRAILSETGHPHAMADWDWDGPRITIAYDVVPLRNIINEPGQHWIPLA*