Scaffold Ga0049082_10007521

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10007521
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3650
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003826	Metagenome / Metatranscriptome	466	Y
F087189	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100075213	F003826	N/A	MDPITIGLAFSAAQSAVSYIKQAVALGKDVNSLAGQFSKFFESSDAIHRERSKVKAKASRLGKTDAELGHEALQIAMHSDALRQAERELKDMILWTLGKPEMWEHMIKERTRLFKERAEAEYEEEKRKLAHKKKMADQFIFAMYFIAGSIILFAIAMGGIGLYGVMEEKRIYEEKVAKRNLLIRQQQKERDAKEREARDKAIGGG*
Ga0049082_100075218	F087189	N/A	MKNLYALHSIVALLIVCNFAHAEITIVEDNSSTDKVYMAKVISKKPIIEKVAYMATKNYCEKHYGTIHYSGAVVGTPIIATTKSNQTPICNLVTHEEFYNVVRGYQVTYDFKGTLKTAFLNNEPSEYVQVYNVP*