Scaffold Ga0049082_10006018

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10006018
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4035
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F027510	Metagenome	194	N
F027779	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100060183	F000722	N/A	MADIPYPETGLSQETRDAMYPDTYSDKYNKVFKQFIDDILTVKPVAPIERLDNHSILLDELELMYDAHMTIGGQQNRFNASVLRAAINCIKAI*
Ga0049082_100060185	F008130	GGAG	MADAKTYVYEVYTTRLDTEQMVLIQIFRDPDNGQVLHAQMAFKNAIGDSWGTPYQLEKK*
Ga0049082_100060186	F027779	N/A	MDEWIRQAIKYGGGAFWNNGSYGVRPKRNSESLSVHATGRAVDLSYRMSEKHPTANRKGSMAFLRILIANANELGVECVLDYFPKAFGRGYRCDRQAWKSYSKPEIHGAPGGDWFHVEVAPSFVNQPLNLIQQAFKRVFTELPQ*
Ga0049082_100060187	F027510	N/A	MTVNNLPKFLILLVGLLCLTALMIADKIDMASGVPMLTMIIGYSIGNGVNAKQGNESSNVFGNKRKQ*