Scaffold Ga0049082_10003326

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10003326
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5224
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F019997	Metagenome / Metatranscriptome	226	Y
F084140	Metagenome	112	Y
F093195	Metagenome / Metatranscriptome	106	N
F093225	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_1000332610	F093225	GGA	MIITIFATVGIITAALLGLRQLVEPYKEKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGSSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLSVSKSKEPV*
Ga0049082_1000332611	F019997	AGGAG	MNKKALEAAAGTYLRAAAAAVAALYMSGITDPKTLANAFLAGLLGPLAKALNPKDPSYGFGAKK*
Ga0049082_100033262	F084140	GGAG	MYTIGKHITIWQRQQSEADLDEILMGAEVFHAIAKELKRRSKSVL*
Ga0049082_100033263	F012098	AGG	MPKVHKVGPKHFVQLTNFPFKWGFKFFVRGWTQEIEHPFRTSTPFIVRLPRYKALVFGKWTGTKNEEEALTMALGKREVTYDDFTEKAGWTPAPDSDREAGGNNPYSRFDLMDGAVDVYDWKTYYNLAKTTE*
Ga0049082_100033266	F016389	GGA	MKLIRKFAVQGHAIPKSSHAPRGPFPPEVLAGPQMEQDLEHADSLHVALDDVRFFKCKDCERILEELELEEHQCDEWDD*
Ga0049082_100033268	F093195	AGGCGG	MAGAIDKGHQSYNDFNSGAESKQAPLSAIDKKILNFAMKVSRNPAIKTHGQILRNFGMYPPEFWTRAQNLSDHPEVDPQSKEQLSRIFSEPSRPGPMTGGAPIDVYGKQFSHGVEW*