Scaffold Ga0049082_10003027

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10003027
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5426
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100030271	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGIKSKADIVAALAGEGVTWSVYQKTIKDIEDATDEFSENAEEILPRFNPDAQPENTVLVRMTRENFRYDMEGFTFTKEHPFVAMTEEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0049082_100030272	F058150	N/A	MEILVGSNSPITHKVFWQGQLTDSDSLPVVRLYDITEDPGVSPAINPATILSTLTPVKSEVDAGTYIVYIPLAYTDRQRQLKLSWTYSVGGTSTQKDNKIFVQTPYTDMSQAIESLGLGSDYSDPNTRSYAELANAERYARKLIEAYTKQQFFLYDDIQTAYGSGSDVLPLPYKISTLHKLYQNDILLLDTLNSVNNWNFNTVISESGFGIRVNRANMLDNTVYIANGMVPPTISDTWGGSFNAGATYRVQGKFGWKEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGVYSGTGNLYADQLLLPYVLNQMVVI*
Ga0049082_100030273	F056615	N/A	MYALVDSILPMFMDVYRQFDSQDPDTGSIKKEWQFDRTIPCSAKGDISNSSSVNSKNSQVLSNKYSNNEILQIRTTDGVTLREKITNIRNLEGQVIWEELNFPTNTPTVYEILSTTPMTDPLGGTIGYNSTVKRSENQQIGQ*
Ga0049082_100030274	F035307	GGA	LDNSSLLVTAASGLQKGMAGTSGRVLKDSTVAQISAAIYYHAQVVSKLTTSKAFEKKFQSVIFKQIEQDFGLYVDSQARVNPKSLHHVYEWNKAGDKGARLFNLSIASTDGLSFKVASKFLPSKSAVPNEFGKRKHVFINKASVMEAGMPLTIRPRYAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNSAIKKSGFQQIFNSSLTKAMRVPSDVRKVKYSFSPNTLKMQADSAVEAAFGGVA*
Ga0049082_100030275	F000258	GGAGG	MTDYKADVMIDLRKFLWSQLKSNNIFTDTDYYSDNIGQEIIPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEENWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDTNGYSGPSSKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHVGTTGRFL*
Ga0049082_100030278	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVEEEDSAPQAKTFDDVKRKALGIEASGDDIVSLQGSLASQAGFGIGAGLGYTKE*