Scaffold Ga0049082_10000988

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10000988
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8665
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009682	Metagenome / Metatranscriptome	314	Y
F018368	Metagenome / Metatranscriptome	235	N
F054855	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_1000098812	F018368	N/A	MTITTLTTKGQKISNQILSADVIEITQGPFSFTALTETILTEEDKIVIRYEVDDEYCKHEITNDMLNNAHIEDGHIVFAWAHQLSISLYKLSVINAVE*
Ga0049082_100009882	F054855	GAG	LIQKKLKNNMKTYKQLVLVEFRNCPPFIYNIISDKPISIDKVVQHFIDTEDFNDERDSITFIDEITEVKL*
Ga0049082_1000098824	F009682	N/A	MKKDLYLKDKYVIESDDLKFDGKNIIIPSYYASIISDYLCYVNRNDDITDADRDDYIAFVKFFEDITNYKADKGGN*