NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10000770

Scaffold Ga0049082_10000770


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10000770 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9582
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F003112Metagenome / Metatranscriptome506N
F008071Metagenome339Y
F010603Metagenome / Metatranscriptome301Y
F020886Metagenome / Metatranscriptome221N

Sequences

Protein IDFamilyRBSSequence
Ga0049082_1000077010F000635AGCAGGMTLTEIAQFAGEKIGKTDADTLTFLQKSASLNYRRVWNFAPWRETVTTSTYDVTAGSRTVTLGSNVENPLSVAYNNAELQAMDLATIVSQNSSLLDDATTGTPVFFYFKGRNTGGTAELDLYPILETTSTNTLLVVEKLQCLTRTNFVVDFPPSASAIGDELRLPHVSHVVLALTHADALERERQYAKAQTVVQTANSDLSAMANYELSQVGGMKQITPSNLGELSIEEII*
Ga0049082_1000077012F008071N/AMNAMEYVELSGVPESRWPIFREWFSWYNQRGMVGVAKDGEEIVGVAVARVINESDEPTHYLHRPEGDTAFVDLTVTSTDGTSTARSRRAMQCLLTILWDRFGPRRSLIFNRNGVQKKYDYMKFMQKAMA*
Ga0049082_100007702F010603AGGAGMSNEFIRSPLKAKNKAVRIDAQNFTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT*
Ga0049082_100007706F003112GAGVMTRSEYSCFKEALKFAIENNNMVKETKYVGKVKHLLSVNRSIKRIVDDGRNRDDVTDAVVHLAVALRYLEGKGRES*
Ga0049082_100007707F020886GGAGGVSLDEVADLREKVSSVSERLVRMEERQMTLYSMVERSLAFHGDTANRLSALETLKTKVLAVAGVVGLACSMAWDVLKNRFN*
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