Scaffold Ga0049085_10086936

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10086936
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F007644	Metagenome / Metatranscriptome	347	Y
F049617	Metagenome / Metatranscriptome	146	Y
F053291	Metagenome / Metatranscriptome	141	N
F096665	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100869361	F096665	N/A	ISESEYDNMCRDCDATDQMEYCEEDCGYVCSNCNWLGEADLDAVAKCQTHAIYLETKVPEYRKVETK*
Ga0049085_100869362	F000868	AGGTGG	MSFLENENEMVIDATYSEIGAMLVEDWVNANLDEGQMFADFRFAEMSDSNYLKGRFNLFYDLNPGDQYYLECEEE*
Ga0049085_100869363	F053291	GAG	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0049085_100869365	F007644	AGGA	MDYGQKDILNMLTKSSKFIEYMKIHLISLEQDLESNPESINVIDIPGQIEATRHLLSVATDIMNSTNERV*
Ga0049085_100869366	F049617	AGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSGEA