Scaffold Ga0049085_10032241

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10032241
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F019614	Metagenome / Metatranscriptome	228	N
F071998	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100322411	F019614	N/A	MLEVSIWVVYSIYTMNVASIASNKIQVEYSAMPGDGREFLTFKVPNGWDDVKLLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVNGPSFVASIR*
Ga0049085_100322412	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRNENNVAIYQRFNTDGTPRSYEVFIIKVVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV*
Ga0049085_100322415	F071998	N/A	FPMAKRIAVENFTSGYDNLNMEASMNLSADTACYRWNAHTVKAIKYVLNNKPKNTR*