Scaffold Ga0049085_10028336

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10028336
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2089
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F009685	Metagenome / Metatranscriptome	314	Y
F013414	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100283362	F013414	AGGCGG	MKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWQANRHTDELDTEDGIYNSGMTSEGLFLANELNQTLNKLIKTYKWENIKLPADPDKIIRRLPKVEEQSYRHSWLHDNTKEPILMNHPFI*
Ga0049085_100283363	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVAIQEAINKGVTFTDPQPVTSKAK*
Ga0049085_100283364	F009685	AGGA	MKMSDNYLNSVLAEAQKLLWGGSETENIAAHNLISNLIRDRVEQVSN*