Scaffold Ga0049085_10020997

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10020997
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2474
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024784	Metagenome	204	Y
F090376	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100209972	F024784	N/A	MQKLLDVTVWLLVVGSMGWLAYGCYALINLFFIRG*
Ga0049085_100209976	F090376	AGAAG	MTDVVLKDGTIVDNYSKEYMLYCEAKWLTGKDFEFCQEWFAKISAKRLQDIPTIKGYMVLLNA*