Scaffold Ga0049085_10011652

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10011652
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3416
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100116523	F025225	GAG	MLSIELLNHDKFVLRLQQYKDASRKNMARVINDKLGDVAVTAIGTTYRTNVAQIASELQRVEGKIVTKKVFKPFGLTKSGKVKKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGLGGLGMGTKLGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAKLTRGDYSKEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRFYPVRKRVISGAVAVGKPGLEEAVEKVMGDMAVYLARKNKEASDKLKL*
Ga0049085_100116524	F019102	AGG	MNTISLDEELNSAFVAPNKEYMGEPLANYTEGSRLLLMQVRDDADSSIYFIWSFIFIHLQLFKNRKEATKLAWNRDLFREKLLEYIDGKTEADRDMATSIVSSMIEEASKGRVEIIPTPNSPDSGNA*
Ga0049085_100116525	F026543	N/A	SAVAGAGGKLRSLDPVSRTIKEDGSSQVTFWFESGGKGAEVRAEMECPWSEMKCPEESPIRYVRAALENRETLLGLVKRAIPVRVIVRGGQTLLVSENATSDQKRAMLRHL*