Scaffold Ga0049085_10008987

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10008987
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3921
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F025916	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100089871	F011827	N/A	MRNTSHSANTHNLTRSRWKARDAVSSQRHGEKMDDIRLACHIWLLRRCPGYAEEHSTHVEQYARGIGRA*
Ga0049085_100089873	F025916	N/A	MPTHLTRPHLGCRLRDCGAPDCPTCAGAEAARLYREQQECEHEEHDHGICLACGADITDELVGQAEDAADAREDR*
Ga0049085_100089874	F016246	N/A	MSQLDFFPHIPRRLTHDEILAGFAELLRAVEAMQFWQPYP*