Scaffold Ga0049085_10003374

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10003374
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6375
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F016396	Metagenome / Metatranscriptome	247	Y
F020166	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_1000337417	F016396	GAGG	MRKSERLRLLEIHMVRLEMMVELYSQSLTNLLESQGLKGPTDLDAGKWYKAKLDTTDTE*
Ga0049085_100033743	F007921	AGGA	MIDWLVNRIFRWDSLRHAIFDEVHMYDEVDKRIKEYKNEEPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNISLMGLWEDQWLREADADQLDMFENQVDFE*
Ga0049085_100033744	F020166	GGA	MKEPKIMKMDWRPLGYWPVYKDGKLTWEKDPEND*