Scaffold Ga0049085_10000901

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10000901
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11696
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F017592	Metagenome	239	Y
F027494	Metagenome	194	Y
F034044	Metagenome	175	Y
F044356	Metagenome	154	Y
F046910	Metagenome / Metatranscriptome	150	Y
F078264	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_1000090110	F015204	GGGGG	MLFEEWWDQLTKAEHKRIGASNARFVWEECQKYTLMTIEDACKAQAAYDQGMKDGRERFEVHIAGWTLTPGVQPGMIWIRDAGGEGGDFHVHELAEAIGKFYQEKF*
Ga0049085_100009012	F046910	AGGAG	MKPDVKQSFESELEEGEGTAEAALRGVMEALGSRTMVQVVILTAGGQKYALIGPVMNGEDVTEIEFGDLIPMEIAGKMLSGEHRRWLGTHLQ*
Ga0049085_1000090122	F027494	N/A	MKYLTEMAFPVELTFEVLPAMLVEGTELPALLDITKILLTIKGPSGKPRQVDITKTLTEEQIMLLEDEIMEKYDENPSL*
Ga0049085_1000090123	F078264	AGGAG	MPMPLKLRETVVPAHPEPYIRQSVRVALRQRKRGRPKKVGRPKKNTYDNMIRASPSKRAGQRYRSVAVPEDAYHMLKEVAAFYEVGMGNYMYSLILPAFHHAYEESLTLQRIAENKEKAKQKAPDEIPNRDGVPRRTHF*
Ga0049085_100009013	F044356	AGGAG	MAEYFHPAYPKLYRIGGEYAPGLARLFGAQECHGGREHAVKDGPGPGGQCIRCGVHVLNKEWT*
Ga0049085_100009018	F034044	N/A	MTQDEIIKMADASGLSYYGMSKDRDRFLHHVETFAALVSSAEREACAKLCEAQGEYGCQQYAAAIRARSQA*
Ga0049085_100009019	F017592	AGGAG	MDDGDYTMVDEIMHWVTIVILFLMTAVFLGGLVGFIWAVI*