Scaffold Ga0049085_10000445

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10000445
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16275
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F012571	Metagenome	279	Y
F024498	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_1000044522	F007028	AGAAG	MPKINKNAFEETNGSPIDQAVSNMAGQISLSSSPIFICGVNRKINIGNFENVDVYAGITIPLDGIDPLDREAFSEAVKDAAAYGFSLVSKETGERYTLIKEAQQSK*
Ga0049085_1000044533	F024498	AGGAG	MSKVAWDYIVPIVMPKDLKGVTPGKLPESLLRSIPGGGKLHHRAADAWNAMVAKAKADGVELKPTSSGDLYRTY
Ga0049085_100004457	F012571	AGGA	MAIKNPDDVIGVCSECKSDQPTRYMENNAFAQEGKAVVCKYCGGVVIITYRETRDSSLDSSDRERGI*
Ga0049085_100004459	F004789	GGAG	MTTGNLYKNPSTKDCWVYCSSCSRCQDKGRYTKCNGCSGRYDPSGRIETDNDDFCDCKNGILRWKTKNGKVLMSRFKTNPFKGNVRYEKKSEDERDWDSYLKDMRNKMGNPNWNPVSIYED*