Scaffold Ga0049085_10000389

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10000389
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17527
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (89.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034078	Metagenome	175	Y
F035650	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_1000038933	F034078	AGGAG	MSDWKSFININGDFELPNFLYKTINDLMKQALDMGTLLSDDPYKLRAYKEQTKKLFKNKWFDLAQALEFFGIIEQCSCVMAKQDNKDVYCDVCKGARFLISSALTPDQMSEISTFVNAAQSVEIAEKLQKSLMKALSEI*
Ga0049085_1000038935	F035650	GGA	MASNIERFEDKNLFMDKFESLRPDLFFPEEWTDEQRAKAVELVKPQKTRTSMFSSIPMRCEAARCIFAETCPLHQQNLAPKGKACPIEMAMVSQFTGEYMEQLDVSPDNLVEVSMVRDLVDQEVQYLRKTKLLAKEHFIQENIIGIDKDGEPILKKELHLAVELEDRLHKRRKDLRNQLLATREARAKTGQTQLDTAQAISEIIHKVQNIEIQNAKLVRKKLGTYQVDDYIEESEKSVEIKDET*