Scaffold Ga0049080_10062877

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10062877
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F015702	Metagenome	252	Y
F018703	Metagenome	233	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100628771	F029021	N/A	LCQFCGWEIARVDWYHRYNGKLICDNCVMDTMNERERENVR*
Ga0049080_100628773	F015702	GAGG	MIKEIELEYTVSNLVKLSKDKWGDNATEYLAGALDSVITYNQMKVLIDFLKAERTYE*
Ga0049080_100628774	F011646	GGAG	MSNVLELRNGTVKRIIFYEVSDAQNLAIWGGESPSEALKWYRESPLDSKIWVSEWLTDEEDAKEVSPQIEITSIVLSTIANCMERWSN*
Ga0049080_100628775	F018703	AGGTGG	LSKTKQRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEMEADETMGKKWLDITGNTRSTNTRSS*