Scaffold Ga0049080_10051776

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10051776
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1418
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F038234	Metagenome	166	Y
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100517761	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEIQRTMGRPVELAYFLYYNGERTDVCVTKDWILN
Ga0049080_100517762	F038234	N/A	MLTIKNIDSLKGTYVGHWKIHYVTKSKDNYLIKVVHNGSPFDMFNFSIGRVKTSNGDYLMYCQETGNRHYLPIESIGDRDVFIRFLIDELI*
Ga0049080_100517763	F017998	N/A	MNLERLDLEKWEVLERERSNTIADPLYQQWMSELKVSSSYTDRDGIIRANELNNQYTYSVLAGNKSTKFSVSSILSVFK*
Ga0049080_100517765	F031098	N/A	MKTYYDIAIHTASKDVVNIKGVSYSQMMKIANDNPTLLKVEIVREYSKKISNY*