Scaffold Ga0049080_10027758

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10027758
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1976
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F022835	Metagenome	212	Y
F034467	Metagenome	174	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100277581	F007519	AGGAG	MTTGIENLKPEQQRKGRGLGKKPALACTSLRLPKYVMDYFNTNFAYTKQAKMREVLTEYVNNQTGN
Ga0049080_100277585	F034467	GAG	MLAKEYEMNEEIKYSSKAIPLRGHNDPKFKWISAANTDVRRTWRKARLLIRITKGAAYESRT*
Ga0049080_100277586	F080867	AGGAG	MSMNTLSLSNIVVGEDLQKSLDKEGLKLTGVYAMLDPVVSRLASLNPLWTFVINNSGHSMGNNRVACGFIVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPNERIQKAKDAAERVVSRASWNKERERTQHQANVKNEMLAWAETKGNALFLEYLKAEAIPSLRHKVTTSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDTGKYLVRIGDKVDLYDDNTLPVDMRMKMGMLKLVEDEQYLTDVGCKVTSEIFVLLVDELTNVSEGV*
Ga0049080_100277587	F022835	N/A	NPLELCELLTKLNVTNDPKLEDARRQVELAMLGADIEEVKDSPLVRENLKSKVDAILGKFEW*