Scaffold Ga0049080_10025865

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10025865
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2049
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023107	Metagenome / Metatranscriptome	211	Y
F043392	Metagenome / Metatranscriptome	156	N
F066766	Metagenome / Metatranscriptome	126	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100258651	F066766	N/A	LEYTVDTLAKLVRDNYGKNAVEYLVGRLTSVITEKQLKALIDYEKGIDG*
Ga0049080_100258652	F023107	AGG	MDNILPSRTVMFVGDFFTLMTTVVLDETIRDEGEDDNDFAVRLASILMSEIYDFDVASVANSVGVVDEDGIEV*
Ga0049080_100258654	F091353	GGA	MIKTSIDLFDETCNAVSRGELDKQLVPLKKLIEERLSVVRTDTDIKDFVVGDRVVLNSSCGTKSLIGDEGTVVGIRRSKISITFDKPKGRFARTNSKGEIYSANAVVPISIVDKI*
Ga0049080_100258655	F043392	AGTAGG	MEIVDKYYHSNGSAVPFIAALVDDPADGDTKIVIMFDERDFVAVLSLDSLLRDEDISARNNGYHGDKYEKLREDLWDGFLE*