Scaffold Ga0049080_10019381

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10019381
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2372
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100193813	F001781	AGGAG	MKAEDKDKLNECLKILDTTDLGLSMVWLWTWSTINNIMEDETYKVKVTQDQMWDHLCEAVRAGQGFSLEYGAEQHQEEVQDWMLSRDYIVDTMFEDDEEDADATD*
Ga0049080_100193814	F000441	AGGAGG	MQQTDNHINTELSKAQALLWSGSLHEVDEAHNIISNLIKDRMGKAEGTNV*
Ga0049080_100193815	F001019	GAGG	MSDYVPSLEILEVQYSCSPGGIDMFEVYDKSNIPLDIPIYETESLTEAVLFCYNLGKDFTVRTYAEWEERESLYASV*
Ga0049080_100193816	F034924	GGA	MPLYRVFGTKFTNYYTIVSATDEYQAAELANARPLIEWDEIPTDDVVEATDVFLDEDTLIDLEGGL*
Ga0049080_100193818	F003603	AGGCGG	MKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRIMEVVAWVIEKQARRYDREVETGGQVSEGLAIAHKLDTVIDKIKISNDFKNINLPITPKERAEFIKSLPKEQEKSYRYSWLHETNNGSNATNIVQATI*