Scaffold Ga0049080_10011785

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10011785
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3034
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018927	Metagenome	232	Y
F024112	Metagenome	207	Y
F033432	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100117852	F018927	N/A	MNKHIVISRHLAVDGTTTYYVIEKNKNSSSIVWSGTNKQAAYQVAYRNARKANYPLYDTVYDVETDRNGVKHIIPVRNELLEVTE*
Ga0049080_100117853	F033432	N/A	MTEERWHKFESQACVPSCKGWNAWAPLCECGKNYCTFKPSGKIEEMQMVIESRPLDF*
Ga0049080_100117859	F024112	AGGA	MKIQDYDKERATVLNALYCSVKSAIQMENLHNNTRIEWIEDDFKVAQKKLEAIEAEMRVLLGDPFANEEK*