Scaffold Ga0049080_10008825

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10008825
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3496
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F018539	Metagenome	234	Y
F053806	Metagenome / Metatranscriptome	140	Y
F099293	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100088254	F018539	AGGAG	MFSTAKNTIAKAKLVYNRNKELYKLVVAFNVHIKEKDNGDIVHIFPTQKKCDYVSGDIIYEELQAELLRLTATAKKQLRTDNIEFV*
Ga0049080_100088255	F099293	AGGAG	MSDYKQRLDSIMLQLQEIIEEEYEDNDYVQTAFNNLAIILDDNPV*
Ga0049080_100088257	F006112	AGGAG	MKQDYTMYIYKADKRTKTGERLFSTTVWRDRTAEAMRHECDGLYWLYPATKGWRFEYFPTMKTVKNLMSGKDIQIPHDTPRSCDPSSELYWSM*
Ga0049080_100088259	F053806	AGGAG	MRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDECFDLKEMYSDIESGNLDWFMLRVRVMVENIELSSQFLGGCLY