Scaffold Ga0049080_10007673

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10007673
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3749
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F010618	Metagenome	301	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000767310	F010618	AGGAG	MTLKELILKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVVHPALDTYSGYICRIVLCGEIEGED*
Ga0049080_100076737	F006182	AGGA	MEIPDDAIKHYDAAGKLYALEFNDIMYMLQVCIVAEAGAGGYDILQQFEEMENHSITNVRYDDAEFIED*
Ga0049080_100076738	F105155	N/A	MYAMMMQNLLKISAAKKLAAEIKYLEWDLVTFNFYHKSYKGYNFYKRNISLNYWQYTVTSDITHCTFKVYEKEAKQCQTG*