Scaffold Ga0049080_10004933

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10004933
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4630
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F053077	Metagenome / Metatranscriptome	141	Y
F076869	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100049331	F076869	N/A	ASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVTA*
Ga0049080_1000493310	F000716	GAGG	MSLSILFKINIYIMEKLKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELATMCSKKKQRIINVYKKAQIVLNKLKQDITISYSNFIFKTLFPNSPITEYLLSDIETDTSFKNTLTFRDLDINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKSK*
Ga0049080_100049338	F053077	N/A	MLYQLPNGKVIHLTVEQYLELTDLDIQHLIALDAGDHMVNPFSESAVNINTKEKYYDFDYVSLDDDEVQNYKSDDQPFDDIIDLSGLLDN*