Scaffold Ga0049080_10003708

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10003708
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5323
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F071219	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000370810	F071219	N/A	MIHPNNPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDFAKLGALLVSMWASYRVAKKNKND*
Ga0049080_100037082	F049410	N/A	MTRGTRYTNGNEIITFKKIDFIAIGGRKIDHVYFRRKDKHDLIMPLVEWNIKAKFEWEIIN*
Ga0049080_100037084	F042157	N/A	MKLKQKYHAPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLISLKQAFWGGLAATFLLINTKFLTKFTTETPTKTAVIDGDGC*
Ga0049080_100037085	F068425	N/A	MGMDANNNNMKTQHQLITFAVLCLLLIIGLNHCAKEQPKQIPFDYKSEAEMIKKQFGIEQAILLNQLENVNRRLQTANNAKDSIRNRELLLTNTNIALMKKLRHTLPKECDTVFVLCDEIINVKDSSYAALFTAFQVCDSVSVIKDSLITAYKAENVTDSTLLVISKQETKQQRRGKVAAWCVGGAMFLVWLVVGLK*