Scaffold Ga0049080_10003100

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10003100
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5755
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043291	Metagenome	156	N
F051789	Metagenome	143	Y
F083939	Metagenome / Metatranscriptome	112	N
F095171	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000310010	F095171	GGAGG	MLNRTKFPRTFNEAFPNSMENGACIEIHVARLTIADKVVRVVSLIGLIVLALDCFIWRP*
Ga0049080_1000310011	F051789	GGAGG	MKIKTTVHIFYSKYSFDEKGQFLVFYAKVNDDENRTYVGEQEIEIEVPDNYDPRAQQIAALEKEKQKVMADYQKTVTDINNRINNLKAITA*
Ga0049080_1000310012	F083939	N/A	MNAEYIINSAKQTSETLYREHDADQVERLLYRIQLLEGHIRVLSTHIDNARDEIKTLQTELIAKDSK*
Ga0049080_100031009	F043291	GAGG	MRNLSYTTEVHSIDYGYLLVEFDYFESDDSVGLSETYDWFAYTVEAFESEPAGTEVTYELTAADQASIYAQIKKHHVAMLEDFHA*