Scaffold Ga0049080_10001924

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10001924
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7127
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F020009	Metagenome / Metatranscriptome	226	Y
F041597	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100019245	F020009	AGG	MIDSENRPAPTAEEIAQARENAMNAERPASWVWNEAAASYVAPIAIPTDGYPYLWDETTTNWVPFPDFPRN*
Ga0049080_100019246	F041597	GAG	MAETNITGPLWGYEQRSRRLAGLWPTSVYVAVIAVSKKAIFGYGYTTVSVSMTNLVSSAGVVATDTTGVGSIRRALAAAAYGTDKAIFGYGINPAIGLYSLTNKVSNTGVVATDTAGVGTARWGLAAAGYGTDKAIFGYGFDGTSNQSITNLVSNTGVVASNTTGVGTVRYNLAAAGYGTDKAIFGYGFTTVDVSMTNLVSNTGVVGNDVTGVGSARRAPAAAGYGTDKAIFGYGSGATNLSVTNLVSNTGVVATDTTGVGTARYGLAAAAYG*
Ga0049080_100019248	F001009	N/A	LNSEFNYRYQVIGSTPWEKIKTLQGFLVGRKRAAVLEECAELKYRAKLEELEHLRSIPAAKHLILNLRAEILELESHLDDQKHAFELNRKEIKILEKLMAELYTEVEPTRLKHEDGTPYTDDEMFEANANYEFTVTVGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLIPNETSLLTQNDVVGLIGNDKTE*