Scaffold Ga0049080_10001793

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10001793
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7366
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F035302	Metagenome	172	Y
F041650	Metagenome	159	N
F082668	Metagenome	113	N
F091376	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000179310	F082668	N/A	MSDQLATIVVALISTIGIVVVGLMQMFKKEARANAKENREDHAIVSQQLRMIFKTVNRVDDKLEKHLDQHKEGNNGKSMPQK*
Ga0049080_100017933	F041650	GGA	MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDSIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQEKAKELL*
Ga0049080_100017934	F091376	AGGA	MKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDENTVVGYVWSDCDLTGLDKWNFSTMTNTQAMTIAQGLNPECFFGDDGTIQAPQVAV*
Ga0049080_100017938	F016388	AGGA	MNSIIAKTLDLCQRLISLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELSAEEISAAFGTKITRRAAK*
Ga0049080_100017939	F035302	GAG	MKRPYTGNNDGLALGERKGLKVFYTELTKLYPSLWNNGSFVNRSMRGKQGVLSTHATGRAVDLSFRFMPNHKDSSNTKGIKEGGRKQAMQAMDFVVNHADAFGLECILDYYPIPHGRGWRCDRSSWQIYTKPEIHGAPMGDWIHFELSPAMADNADAMRQAFNNLAKPVTV*