Scaffold Ga0049080

Basic Information
Taxon OID	3300005582 Open in IMG/M
Scaffold ID	Ga0049080_10001356 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005582 Open in IMG/M

Scaffold ID

Ga0049080_10001356 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8402
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8402

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006135	Metagenome / Metatranscriptome	380	N
F007030	Metagenome / Metatranscriptome	359	Y
F010991	Metagenome / Metatranscriptome	296	Y
F091372	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000135611	F091372	N/A	MNIKYDLNRTKLLNEAPRLIKWAIDHGLMSYPLSQKYHDDGSLDPGIEEEIHVDPEQYTPEFCQRAYELRQLGLTLDDTAKAIGVSRGSITYILAKGHEAILASDRIKHDLKQP*
Ga0049080_1000135612	F007030	N/A	MNNPTAATNMNDPFIYAPQPTTVVNEPTTTGTRPSIHVSLYAYGGISAACMMSWVGLTATFSVGDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQIDHDIEFDPADIVRMAELAHQHQATVCIPYPCRTIPPRPALRPKADHLQALKFQLANAEAAPELVPIQMFASGCLAIPRKRLIETLETLGSVKVLPPYRIEWCKDVKVGEFPTLWLPMAVETLPGQLEYLSEDFAAAMRMSLCEVPHFSMMPKKQLNHWGEYPFSFKPYAG*
Ga0049080_1000135613	F010991	N/A	MQGKKDKKPSLHDVALKAGTDRNRVAAALRDDPDLPKAFKDKVKKAVEAVGYVKPPPNQHPNSKLDQEKADAIVEGIVQNKSITTIANEVGLDTETASKYIRGVKVPKDYPDNEDDWRKDVTGFLEVAIWKGTKRLAENSMHFIDDRSLPVAVAVLVDKLAATKGQPTSIHLSMTASVNHRDLMKDLKDRDVTPVNDEQTHDLV*
Ga0049080_100013563	F006135	N/A	MSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDLDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049080_10001356

Overview

Ecosystem & Geography

Associated Families

Sequences