Scaffold Ga0049080_10000466

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10000466
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13746
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F032279	Metagenome	180	Y
F038591	Metagenome	165	Y
F055728	Metagenome	138	Y
F093869	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000046610	F013413	AGGA	MTENEYNETFDMQMEREHQQVMARMQEFKLIGEQISKMPVTSTRTLEIEVRYLMGIISELETQVKNLESETRRLEMLVTRVNN*
Ga0049080_1000046611	F032279	GAGG	MPFIIKAIIAFALSAIGLGVYQVPQPRPDMSSTTPTSKPYEAVGGFGQYIADVYRFVPPVTTTLAPQPVYKHGDCSWLPKVALQAGWQPEQIPKLLTISARESGCCPRRIGGQRVLPNCTPNGFAETTHMSDSGIMQINGTHWKPDHAQYDGLICKRMGICTQEPLLDALTNLKAARLLYEQAGWSPWSICHRDNTCK*
Ga0049080_1000046613	F093869	AGG	MSLRTGARLENEALHARLVFIVGVIMAVTFAIMVIGLLFGMLFVNMPEKLSPLDGSIVDLLSTISVFLTGALSGLVASNGIKKDKQADSETVHS*
Ga0049080_1000046619	F038591	N/A	MTTTARIEVVGVKDTINQLNKLDKELAKEFKASATQIAQPAMNAAKNMYTKVPLSGLSRNWKSQKRTPPQSIKGFDVSRAKAGVQMKFDTRRNAVGVILIIQKDQAAAIFETAGRANANRLSNNLDPVRPGRTRLIGPAVYSARRGIEREMKSVIAEASRTVQKGL*
Ga0049080_100004667	F055728	GGA	MRRSYDPHYGSREQLRDSAEHGMKVMRERDALKTENAKLLDEITELKALIAYITEGE*
Ga0049080_100004669	F014620	N/A	MFAPSIGLGGTYERPAINRDVVIIAREAQQTSVQAATKVKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVRDGHVIDSGIRRLTRAGNQAIVWRCV*