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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005582 Open in IMG/M |
| Scaffold ID | Ga0049080_10000342 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15227 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (5.88%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008546 | Metagenome / Metatranscriptome | 331 | Y |
| F017298 | Metagenome / Metatranscriptome | 241 | Y |
| F019139 | Metagenome / Metatranscriptome | 231 | Y |
| F061550 | Metagenome | 131 | Y |
| F074877 | Metagenome | 119 | N |
| F075858 | Metagenome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049080_1000034210 | F074877 | N/A | MTTEQMTATILLYSIELRDEYNEMAGAFGHTDPATQRLQTKYVTLLILIEKLGLDENY* |
| Ga0049080_1000034212 | F017298 | GGA | METNENEFTQTTFSLKRKMLWWREQSVEGDKGGSFNLELYLDYLSEQDFNEIKQDK* |
| Ga0049080_1000034213 | F008546 | N/A | MKEVKWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAAINPFLCLPMNHYTIEVKTFKGRAIIALAFSIGFVVGILTIRPFFI* |
| Ga0049080_1000034218 | F061550 | N/A | MELELLKARTILRKTLLKLKVSREEIEEKNEHRKDLINSMLETENELSEVLTTFLILEKQAREFSQSAYRLERLNLDLKFKIKDLENQIEVNNF* |
| Ga0049080_1000034229 | F075858 | N/A | MLIDDHSLREYLLEALKTRTRNQIVKEIQGRGETFHQYNIDRFLQGKDVSLETAKKLDKYIYRIKIYDCNLF* |
| Ga0049080_1000034233 | F019139 | N/A | MKTKTEHLGKYITTYNGNFETSFTVTEETAKDHKYYTSIGLGYLFEESTPKVKYTGVENTKKDKDA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |