Basic Information | |
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Taxon OID | 3300005581 Open in IMG/M |
Scaffold ID | Ga0049081_10132290 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 919 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005745 | Metagenome / Metatranscriptome | 391 | Y |
F025737 | Metagenome / Metatranscriptome | 200 | Y |
F062746 | Metagenome / Metatranscriptome | 130 | Y |
F084239 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049081_101322901 | F062746 | N/A | KAKQFYLSYPSDLMDKTRVTTGLEQANSFFDGLWAEGYFDND* |
Ga0049081_101322903 | F084239 | GGAG | MTRSSRFMEYLKIHLISLEQDLEQIDYVNEHHLYRVKQAEIENTRHILSVATDIMNETKESYAD* |
Ga0049081_101322904 | F005745 | AGGAG | MQTDPTPLDERLQRMVNLKVPGIDIMHGELKMRMLEAEAELTEAQRIEEDNDYGDAMESMERKYWEGYFDALVKCYTLTYDISFAIGARNED* |
Ga0049081_101322905 | F025737 | GGAG | MKTEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYRQNCTIDEMWDHLCEAVEAG |
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