Scaffold Ga0049081_10132290

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10132290
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 919
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005745	Metagenome / Metatranscriptome	391	Y
F025737	Metagenome / Metatranscriptome	200	Y
F062746	Metagenome / Metatranscriptome	130	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_101322901	F062746	N/A	KAKQFYLSYPSDLMDKTRVTTGLEQANSFFDGLWAEGYFDND*
Ga0049081_101322903	F084239	GGAG	MTRSSRFMEYLKIHLISLEQDLEQIDYVNEHHLYRVKQAEIENTRHILSVATDIMNETKESYAD*
Ga0049081_101322904	F005745	AGGAG	MQTDPTPLDERLQRMVNLKVPGIDIMHGELKMRMLEAEAELTEAQRIEEDNDYGDAMESMERKYWEGYFDALVKCYTLTYDISFAIGARNED*
Ga0049081_101322905	F025737	GGAG	MKTEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYRQNCTIDEMWDHLCEAVEAG