Scaffold Ga0049081_10085699

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10085699
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033352	Metagenome / Metatranscriptome	177	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100856991	F033352	GAGG	MTDLTKFRLIENIEVMACRNSAERVVKAINRGDLAQAKDLARKHEIAWHLADREFQDLNQPHRNNDFCDDE*
Ga0049081_100856994	F072095	AGG	MIRDLEQEGILPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILESLLKKSGVQS*