Scaffold Ga0049081_10059948

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10059948
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008688	Metagenome / Metatranscriptome	329	N
F015867	Metagenome / Metatranscriptome	251	N
F024743	Metagenome / Metatranscriptome	204	N
F075864	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100599481	F024743	N/A	QDSSAYNEGKKAQDLIIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYESRS*
Ga0049081_100599482	F075864	N/A	MNPDPNLWIEVPQEVKDAALLLGNYFKKQGIDDWALYDVCSRKSLDNLENQVKNLETRKAIKRIYRLNGFID*
Ga0049081_100599483	F015867	N/A	MKYKVTYYDYDSDSYLTKELYWMASYRGSFDFVPVSDGPKENWKGFSISGSGVNVFYNDKGMNITVDGFQEMKSGGYGKTTTFIQGVI*
Ga0049081_100599484	F008688	GGA	MSKIILACLLSLFIAVTVEPPKTKVYLIMSYRGNDLSIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE*