Scaffold Ga0049081_10035320

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10035320
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1900
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F015354	Metagenome / Metatranscriptome	255	Y
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100353201	F023295	AGGCGG	MLLSMLHGLGCQTKVILVPDGQPVQLAESVRAKVYAFDATGKPVPSSNKVILPAGWYVLPRK*
Ga0049081_100353202	F015354	GGAG	MNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGAIVTIAGLVLSMLKNKKATVSTPPPAA*
Ga0049081_100353203	F035672	N/A	MLTDSIRDLSIGVGGPASGLIIANIVPDPVLAHISITLGSLAALSVIIKNVLDIWSNRNK
Ga0049081_100353204	F067530	N/A	MQTLTLTLDPATANALITALEVARRQGDFAVARTAVSVISELIRQDEEFKKLNPPVQIQTAE*
Ga0049081_100353205	F002843	N/A	MIVPVNIISVQVNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDDLTGQPTEVVSIANALWTPAVVAAYKLANPAPDNSVPVS*