Scaffold Ga0049081_10033037

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10033037
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1966
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F086584	Metagenome	110	N
F093233	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100330371	F086584	GGAGG	MYDGEEGDFCEWIDSVGEVTVQWTWCAGEDWEMHGFFDVFVFQGKNDITYDIPKDELEWLEEQVPLYAGYEPPSRQRVSQVINAYYNKTF*
Ga0049081_100330372	F005737	AGGA	MFEIEKYTKPTNWANVALWVVSVAALVVVALDIFYWRA*
Ga0049081_100330373	F093233	AGGA	MRKQIKITEVYLQAEYFNPQLNCTIPAAWIAVFNNGHEVAICREWEASTSEDAQAYYEIHHVEYA*