Scaffold Ga0049081_10025300

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10025300
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2253
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004583	Metagenome / Metatranscriptome	432	Y
F048994	Metagenome	147	N
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100253002	F003750	GAGG	MTLDMVNRLLYLVVWGSGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFAGCLAGVGLLCGIWMVMVQSSRELQGKKQYQYVVL*
Ga0049081_100253005	F004583	AGGAG	MRTTRNSDRLREILFSTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQMSLVCQTESVEPKRNGWFSGHIKTKEDRLANIMD*
Ga0049081_100253006	F048994	N/A	MIGTVKIEFGAMNLYVNGVCVATTSTMAGIKHAAKRYNLQGYILSTG*
Ga0049081_100253007	F071169	N/A	IEVQVNLDELDVVRRKLSFQCNKDFTAEETIQFLIEREYNTVKKPRHTAQKSDIKEAIYNGYTSTEAMKKLNVSRSTFFRHKAKERKLLEESE*