Scaffold Ga0049081_10021637

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10021637
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2441
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F047649	Metagenome / Metatranscriptome	149	N
F047662	Metagenome / Metatranscriptome	149	Y
F074911	Metagenome / Metatranscriptome	119	N
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100216371	F074911	N/A	MTDEQILQLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIYDKAYDDGC
Ga0049081_1002163710	F000919	N/A	MRFRKIEFRFSKYNNKYELVSWYENTDGSENCYVIAFFDKNKEGYDMRTIGTRFFEDKDAWVVGKYGLEFLNAISAIQKEEDELK*
Ga0049081_100216377	F047649	N/A	MRYYESRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRNLVREQNLTITPEFSKLIGLK*
Ga0049081_100216378	F099191	N/A	MKRNNFDFMDAWTVLIVGTVVLVLLAAPITGVMKVITTQQALNEQCGTNYNFFQVATAGDNLSRLCQIKNQTVTIK*
Ga0049081_100216379	F047662	AGGAG	VLLLPYNDFIRNKPMNYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYEGSALTLDNVMECIQLHLKQHQN*