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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10020706 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2496 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000141 | Metagenome / Metatranscriptome | 1941 | Y |
| F004599 | Metagenome / Metatranscriptome | 431 | N |
| F043389 | Metagenome / Metatranscriptome | 156 | N |
| F046377 | Metagenome / Metatranscriptome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_100207062 | F046377 | AGG | MYAQIVCVYVGSDMKIQIDLKAADFEQLWINSMEWMNNDWQKQADRFDPSPLFSWGYAYWFDNYAALKMAEGFLSSLGKNYATHSDENTGDWLILTNYASPCHLRKKLVNA* |
| Ga0049081_100207063 | F043389 | N/A | MIETTAAWIWLYCMLGIIIGYGIVTKIIDQAFDRGYWSGRSAGWRAANEHYEKVRKLKSQSVFDYDKQN* |
| Ga0049081_100207065 | F004599 | GGAG | MAFNLADYEDVATLNKWLISNYPNFRSDISVISADPDKGYILVQATLWRDSNDPSPAVSNIAFGSRDTYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDDAPIKNIYGKSGNSQVIEMALRKSFADDAKTTSEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYFGYVCSAPKGQQCDAKWAVTAANGSWFFREED* |
| Ga0049081_100207067 | F000141 | N/A | MMVSIWYVLFAIAGNENITMKHAQFKCNGCSRKTEFLWLEQLDTPDGFKAYQCMDCGCVGIKNIAEAITVDTEISRCKQCGAWQFRKLPCHTCNLIGAK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |