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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10019805 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2553 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002406 | Metagenome | 562 | Y |
| F009266 | Metagenome / Metatranscriptome | 320 | Y |
| F010618 | Metagenome | 301 | N |
| F027179 | Metagenome | 195 | Y |
| F060914 | Metagenome | 132 | N |
| F074873 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1001980510 | F074873 | N/A | FVRELSKLYPNATFEMVSGSIENDCHYEFTCENGKFEETCSYETFKEAVIDGKWGGWNEWSELLEESEELPENQEEA* |
| Ga0049081_100198054 | F009266 | AGAAG | MTDKERKILDKEIQYLCEQQDRVKAIREYTGINPGFTFLREVNIIESLYKSLLENRKYDKSTYFSCATSGWHVVYLRDKKTYKNGEKFNIKIFHTFVWSDNCE* |
| Ga0049081_100198056 | F060914 | GAG | LQKEKQLKRLIKVRSDISSSIFPIQLYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRKRKNEKNAQIIQSINELKAQGIL* |
| Ga0049081_100198057 | F027179 | N/A | MSDGLFLYKSSDGFVVMDENDNILKLSKTYQTCIRYILKTLHSRRVAEREAIEEIDKSKV |
| Ga0049081_100198058 | F002406 | N/A | MENIKWIRAMSDRLRDELSKEYDEETKDLIVRAFMRGLYQDPSIVEELKSSSLIESDYFEDDK* |
| Ga0049081_100198059 | F010618 | AGAAG | MTLRELILKLQELDKKYEQYSQDTEVVLAVHSKNEYNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIEQED* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |