Scaffold Ga0049081_10017797

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10017797
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2693
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039104	Metagenome / Metatranscriptome	164	Y
F045761	Metagenome	152	N
F068841	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100177972	F039104	N/A	MTNLKALVVRATINNIVKWRVYFAGELLATFENETDAIYYANFIDRQ*
Ga0049081_100177973	F045761	AGGA	MIQNYLIIGMAILFVVVLLQLHKTSEREDELLEKISNKNRLIWDYETELLEIRSKVAEANDRAKTWELQANFLKELNDDKPKSTRGKGNN*
Ga0049081_100177978	F068841	GGAGG	MIELAINGWILTVQGRITEEKYVYTIEAVDNWLIANHIEELHDYLNSTTSGFGDCCIKEFDGINSEAFFNAEPTKFQVLFMIGQRTNFF*