Scaffold Ga0049081_10015995

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10015995
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2835
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F007691	Metagenome / Metatranscriptome	346	Y
F021288	Metagenome / Metatranscriptome	219	Y
F022197	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100159956	F021288	GAG	MLGYTQRDLADMTYGVYQADLLINADENPAIHNYLVNAHDFLQGLWAEGYFDGK*
Ga0049081_100159957	F007691	AGGAG	MTTINDLINEIYESNFSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG*
Ga0049081_100159958	F022197	AGGA	MTTTEITENPEMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWDIEENVFIPELGEWHTK*
Ga0049081_100159959	F002935	AGGA	LRERSKGYIGQIVDGKKLAVIANGIYNLQYSSEFSECTVDNLLFVTLEEKNVFGDNKYALVCTEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTADIADYVRVFGSRLDDNCSLWQSKMSVAEDTIVI*