Scaffold Ga0049081_10014023

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10014023
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3031
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F008237	Metagenome	336	Y
F015702	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1001402312	F008237	AGGA	MTIEWSRIERWQYIVDAVASDYHRKFSPIEFDDIQQSLYQWFVEHPNKLDTWEAIGNKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEAILPSVLRGEFGLGAKVDLGRPGRPSAPNEGGNMMAMMIEVDYAFWKLPKDDRKVLFLRHAESMDFGAIATELQLGSEDAARMRHKRAIRKLINKIGGFRPFRDEDEVQSPSNEDSAGSE*
Ga0049081_100140232	F005558	AGGAG	MEQESISWGELAELTHATQVARFNFCMCEDNEGNENPYNDCPKTGE*
Ga0049081_100140235	F015702	GGAG	MIREIELDYTVNNLVRLAKDKWGDNATEYLAGRLESVITYTQMKALIEGLTKEKG*
Ga0049081_100140239	F003658	N/A	MFDLQGEPTFACICGCLMFEVTVMWDMEDRTVGWYDLKQKCKECGSLSTAPTPIDGDDDAYL*