Scaffold Ga0049081_10013370

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10013370
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3100
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001092	Metagenome / Metatranscriptome	780	Y
F005025	Metagenome / Metatranscriptome	414	Y
F042750	Metagenome / Metatranscriptome	157	Y
F066524	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100133701	F066524	GAGG	MAMTYAQLVVAVSDYCENTFDTTDMNTMIKQAEQRIYNTVQIAN
Ga0049081_100133703	F005025	AGGAG	MDKKQVKSIADTEAKKMVKGHESRMHAKGMKAGGPTSLDRKMYGKNLSRAMNQKSGSK*
Ga0049081_100133707	F042750	AGGAGG	VIKGHMGDCAVMEEGPCTCGTDEILEELALEDADLTAEDFE*
Ga0049081_100133709	F001092	GGA	MAIAKPKGGVIKSLKKAGFYAAAKPKRLSIINKVTTKPQRIEMVDKLFLAKKKGSTK*